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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
260
ATAC-seq
169
DNase-seq
28
snATAC-seq
3
FAIRE-seq
Assay category
1227
Transcription
897
DNA binding
460
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Date released
163
June, 2019
81
February, 2023
70
August, 2021
39
May, 2022
20
November, 2019
20
October, 2019
11
May, 2023
10
April, 2020
November, 2018
8
February, 2021
8
January, 2021
8
July, 2019
8
October, 2017
5
August, 2017
4
March, 2019
2
January, 2018
2
March, 2020
1
August, 2022
Available data
379
bed narrowPeak
235
bam
214
bigWig
174
bigBed narrowPeak
169
bed broadPeak
168
bed bed3+
167
bigBed broadPeak
64
xls
31
fastq
5
bed bed3
1
tsv
1
txt
Organism
459
Homo sapiens
Biosample type
460
tissue
286
primary cell
43
in vitro differentiated cells
31
cell line
Organ
150
kidney
79
pancreas
66
heart
44
limb
43
blood vessel
43
vasculature
41
artery
34
musculature of body
31
eye
30
brain
22
liver
18
ureter
12
bone element
12
epithelium
12
skeleton
10
lung
7
adipose tissue
7
connective tissue
3
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
429
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
326
GRCh38
278
hg19
Lab
305
AMP-T2D consortium
81
Katalin Susztak, Upenn
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
audit script error
2
inconsistent ontology term
month_released!
November, 2018
November, 2020
BIOSAMPLE
ASSAY
460 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
68
1
7
1
coronary artery
36
2
liver
20
heart
18
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