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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
35
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
3
control
Date released
30
June, 2019
18
July, 2019
12
February, 2020
2
March, 2020
November, 2018
2
October, 2019
1
February, 2023
1
October, 2017
Available data
48
bigWig
45
bam
33
bed bed3+
31
bed narrowPeak
31
bigBed narrowPeak
30
bed broadPeak
30
bigBed broadPeak
26
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
fastq
Organism
66
Homo sapiens
Biosample type
54
tissue
12
primary cell
Organ
721
pancreas
530
connective tissue
417
adipose tissue
395
epithelium
302
kidney
259
heart
235
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
66
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
2
intestine
2
pericardium
2
spleen
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
44
GRCh38
39
hg19
Lab
66
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
November, 2018
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
66 results
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DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
12
1
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
1
1
1
Ammon's horn
1
1
1
caudate nucleus
1
1
+ See 20 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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