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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
Assay category
66
DNA binding
44
DNA accessibility
7
Transcription
4
3D chromatin structure
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
4
July, 2019
3
February, 2020
Available data
114
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
bed bedMethyl
1
bigBed bedMethyl
Organism
121
Homo sapiens
Biosample type
121
tissue
Organ
937
pancreas
736
liver
679
connective tissue
517
epithelium
487
adipose tissue
385
heart
348
kidney
282
brain
234
vasculature
229
blood vessel
141
artery
121
limb
92
musculature of body
75
bone element
60
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
121
AMP
Genome assembly (visualization)
96
hg19
95
GRCh38
Lab
121
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
November, 2018
assay_title!
RNA microarray
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
121 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
1
4
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