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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
Assay category
35
DNA binding
Target of assay
21
histone
21
histone modification
14
transcription factor
12
broad histone mark
9
narrow histone mark
6
chromatin remodeller
5
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
August, 2017
11
December, 2017
November, 2018
2
February, 2018
1
October, 2018
Available data
35
bam
35
bigWig
35
fastq
33
bed narrowPeak
20
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
6
bed bed3+
Organism
35
Homo sapiens
Biosample type
21
cell line
11
in vitro differentiated cells
2
stem cell
1
tissue
Organ
21
liver
3
embryo
1
epithelium
1
pancreas
Project
35
AMP
Genome assembly (visualization)
35
hg19
31
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
35
inconsistent control read length
4
inconsistent control run_type
1
inconsistent assembly
month_released!
November, 2018
August, 2017
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
cell line
HepG2
21
in vitro differentiated cells
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
Hepatic endoderm
1
stem cell
hESC
2
tissue
body of pancreas
1
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