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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
total RNA-seq
177
ATAC-seq
50
ChIP-seq
41
WGBS
single cell RNA-seq
22
snATAC-seq
1
pCHi-C
Assay category
216
Transcription
199
DNA accessibility
50
DNA binding
41
DNA methylation
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
697
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
218
June, 2019
213
August, 2021
204
February, 2023
166
May, 2022
120
July, 2018
120
May, 2019
105
July, 2019
94
December, 2017
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
64
March, 2020
61
November, 2019
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
September, 2020
16
January, 2021
16
November, 2020
12
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2019
6
April, 2018
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2018
1
August, 2022
Available data
307
bam
280
bigWig
189
tsv
101
zippedFastqFolder
65
bed narrowPeak
50
tagAlign
24
fastq
7
txt
1
bed bed3+
Organism
507
Homo sapiens
Biosample type
258
tissue
248
primary cell
1
cell line
Organ
234
liver
104
pancreas
80
epithelium
1
musculature of body
Project
361
AMP
101
HPAP
45
T1D
Genome assembly (visualization)
299
hg19
207
GRCh38
Lab
297
AMP-T2D consortium
101
Klaus Kaestner, Upenn
69
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
Audit category:
8
inconsistent ontology term
1
audit script error
month_released!
November, 2018
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
507 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
WGBS
snATAC-seq
pCHi-C
tissue
liver
163
20
50
islet of Langerhans
6
18
skeletal muscle tissue
1
primary cell
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
Langerhans cell
21
+ See 28 more…
cell line
HepG2
1
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