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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
60
ChIP-seq
35
ATAC-seq
8
WGBS
3
DNase-seq
3
pCHi-C
3
total RNA-seq
Assay category
60
DNA binding
38
DNA accessibility
8
DNA methylation
3
Transcription
Target of assay
35
histone
35
histone modification
20
broad histone mark
20
control
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
40
May, 2024
35
February, 2023
10
April, 2019
8
July, 2019
6
May, 2019
5
June, 2019
3
February, 2020
3
March, 2020
2
February, 2021
Available data
78
bed narrowPeak
49
bigWig
29
bam
6
bed bedMethyl
6
bigBed bedMethyl
6
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
tagAlign
Organism
112
Homo sapiens
Biosample type
107
tissue
3
primary cell
2
cell line
Organ
284
pancreas
213
epithelium
161
kidney
161
liver
122
brain
112
heart
95
connective tissue
89
bone element
65
adipose tissue
65
blood vessel
65
vasculature
46
artery
27
eye
26
limb
22
musculature of body
12
nerve
11
blood
11
bodily fluid
11
lung
8
embryo
6
spleen
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
112
AMP
Genome assembly (visualization)
266
GRCh38
hg19
Lab
72
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
month_released!
November, 2018
assay_title!
single cell RNA-seq
assembly!
hg19
BIOSAMPLE
ASSAY
112 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
total RNA-seq
tissue
left cardiac atrium
40
coronary artery
2
35
1
heart left ventricle
6
4
1
heart
2
1
2
heart right ventricle
2
2
1
+ See 3 more…
primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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