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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
ATAC-seq
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
35
DNA accessibility
20
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
14
July, 2019
12
February, 2020
2
March, 2020
November, 2018
1
February, 2023
Available data
237
bam
216
bigWig
201
bed narrowPeak
125
bigBed narrowPeak
118
tagAlign
45
bed broadPeak
36
bigBed broadPeak
33
bed bed3+
22
tsv
19
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
280
Homo sapiens
Biosample type
259
tissue
21
primary cell
Organ
937
pancreas
735
liver
680
connective tissue
524
epithelium
487
adipose tissue
353
kidney
352
heart
280
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
280
AMP
Genome assembly (visualization)
211
GRCh38
158
hg19
Lab
280
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
November, 2018
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
280 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
12
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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