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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
88
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
60
DNA accessibility
4
3D chromatin structure
Date released
39
May, 2022
11
February, 2023
7
August, 2020
3
October, 2022
3
September, 2020
1
March, 2023
Available data
39
zippedFastqFolder
10
bigWig
10
fastq
4
hic
3
bedpe bed3+
3
cool
Organism
64
Homo sapiens
Biosample type
53
primary cell
11
tissue
Organ
63
pancreas
52
epithelium
Project
AMP
52
HPAP
11
T1D
1
ITG
Genome assembly (visualization)
11
GRCh38
3
hg19
Lab
52
Klaus Kaestner, Upenn
11
Kyle Gaulton, UCSD
1
ITG
Audit category:
3
audit script error
month_released!
November, 2018
award.project!
AMP
BIOSAMPLE
ASSAY
64 results
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ATAC-seq
Hi-C
primary cell
pancreatic alpha cell
29
1
pancreatic beta cell
16
1
pancreatic acinar cell
4
1
chondrocytes
1
tissue
islet of Langerhans
11
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