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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
Assay category
34
DNA binding
Target of assay
24
histone
24
histone modification
14
narrow histone mark
10
broad histone mark
10
transcription factor
6
chromatin remodeller
5
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
10
August, 2017
November, 2018
2
December, 2017
1
October, 2018
Available data
34
bam
34
bigWig
34
fastq
32
bed narrowPeak
26
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
2
bed bed3+
Organism
34
Homo sapiens
Biosample type
21
cell line
in vitro differentiated cells
6
tissue
5
primary cell
2
stem cell
Organ
22
liver
9
pancreas
4
epithelium
Project
34
AMP
Genome assembly (visualization)
34
hg19
30
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
34
inconsistent control read length
5
inconsistent control run_type
4
inconsistent assembly
month_released!
November, 2018
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
cell line
HepG2
21
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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