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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
114
ChIP-seq
19
RRBS
10
WGBS
2
ATAC-seq
Assay category
198
DNA accessibility
114
DNA binding
29
DNA methylation
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
70
November, 2017
46
August, 2017
23
July, 2019
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
3014
bam
2830
bigWig
1612
bed narrowPeak
1469
tsv
1129
fastq
952
bigBed narrowPeak
358
tagAlign
312
bed broadPeak
275
bigBed broadPeak
239
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
19
hic
16
bedpe bed3+
7
bed bed3
7
csv
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
335
Homo sapiens
Biosample type
223
tissue
59
cell line
59
primary cell
in vitro differentiated cells
Organ
82
kidney
62
liver
50
musculature of body
47
brain
38
heart
37
limb
28
epithelium
21
pancreas
19
vasculature
18
ureter
14
blood vessel
11
connective tissue
5
eye
4
adipose tissue
4
artery
4
vein
2
nerve
1
pericardium
Project
341
AMP
Genome assembly (visualization)
307
hg19
282
GRCh38
Lab
339
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
month_released!
November, 2018
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
341 results
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DNase-seq
ChIP-seq
RRBS
WGBS
ATAC-seq
tissue
heart
18
1
muscle of arm
17
brain
12
3
1
skeletal muscle tissue
13
2
kidney
13
1
+ See 47 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
1
cardiac fibroblast
3
1
choroid plexus epithelial cell
1
2
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
+ See 18 more…
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