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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
25
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
209
DNA binding
30
DNA accessibility
21
Transcription
1
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
25
control
Date released
86
October, 2019
82
November, 2017
28
May, 2019
25
June, 2019
16
October, 2017
12
February, 2020
11
July, 2019
2
March, 2020
November, 2018
1
February, 2023
Available data
224
bam
200
bigWig
190
bed narrowPeak
118
tagAlign
114
bigBed narrowPeak
34
bed broadPeak
25
bed bed3+
25
bigBed broadPeak
23
tsv
10
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
263
Homo sapiens
Biosample type
263
tissue
primary cell
Organ
724
liver
644
connective tissue
593
pancreas
488
adipose tissue
340
heart
318
kidney
263
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
56
eye
46
blood
46
bodily fluid
43
nerve
37
embryo
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
263
AMP
Genome assembly (visualization)
201
GRCh38
141
hg19
Lab
263
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
November, 2018
biosample_type!
primary cell
BIOSAMPLE
ASSAY
263 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
tissue
brain
20
12
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
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