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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
Assay category
65
DNA binding
Target of assay
389
histone
389
histone modification
363
transcription factor
198
broad histone mark
190
narrow histone mark
153
control
73
recombinant protein
65
RNA binding protein
27
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
37
November, 2017
November, 2018
6
August, 2017
6
January, 2019
5
May, 2021
4
June, 2019
2
December, 2017
2
December, 2018
1
August, 2021
1
May, 2019
1
November, 2019
Available data
59
bam
58
bed narrowPeak
58
bigWig
53
fastq
52
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
1
tar
Organism
65
Homo sapiens
Biosample type
44
cell line
tissue
11
in vitro differentiated cells
10
primary cell
Organ
37
liver
8
blood
8
bodily fluid
8
epithelium
5
connective tissue
3
brain
2
kidney
2
vasculature
1
blood vessel
1
eye
1
heart
1
pancreas
Project
65
AMP
Genome assembly (visualization)
57
hg19
52
GRCh38
Lab
59
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent control run_type
month_released!
November, 2018
biosample_type!
tissue
BIOSAMPLE
ASSAY
65 results
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Clear Filters
ChIP-seq
cell line
HepG2
35
GM12878
8
EndoC_BH1
1
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
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