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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1015
total RNA-seq
662
ChIP-seq
244
ATAC-seq
174
single cell RNA-seq
165
DNase-seq
87
RNA microarray
28
snATAC-seq
21
WGBS
21
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1205
Transcription
662
DNA binding
440
DNA accessibility
32
DNA methylation
15
3D chromatin structure
Target of assay
425
histone modification
424
histone
244
broad histone mark
180
narrow histone mark
157
control
82
transcription factor
23
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1695
bam
1549
bigWig
1068
tsv
776
bed narrowPeak
497
bigBed narrowPeak
351
fastq
200
bed broadPeak
192
bed bed3+
189
tagAlign
163
bigBed broadPeak
157
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2460
Homo sapiens
Biosample type
2469
tissue
1053
primary cell
571
cell line
386
in vitro differentiated cells
10
stem cell
Organ
544
connective tissue
495
pancreas
486
adipose tissue
348
liver
295
kidney
265
heart
177
brain
158
bone element
107
blood vessel
107
vasculature
82
musculature of body
53
limb
47
artery
35
eye
20
lung
18
ureter
16
skeleton
16
spleen
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2372
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1636
GRCh38
1575
hg19
Lab
2157
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2018
October, 2019
BIOSAMPLE
ASSAY
2469 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
284
50
55
1
7
3
1
4
1
adipose tissue
382
2
2
3
1
liver
166
136
20
1
3
1
1
1
1
kidney
49
23
75
64
13
6
1
1
1
bone element
84
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