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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1687
ChIP-seq
1527
total RNA-seq
529
ATAC-seq
368
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
68
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
6
DNase-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
6
DNA accessibility
1
DNA methylation
Date released
3
August, 2017
3
October, 2019
1
May, 2021
Available data
200
bam
200
bed narrowPeak
200
bigBed narrowPeak
200
bigWig
bed broadPeak
197
bigBed broadPeak
195
bed bed3+
3
fastq
Organism
7
Homo sapiens
Biosample type
4
primary cell
2
tissue
1
cell line
Organ
3
epithelium
3
kidney
1
liver
1
pancreas
Project
7
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
7
AMP-T2D consortium
month_released!
November, 2018
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
7 results
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DNase-seq
DNAme array
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
monocyte
1
skeletal muscle myoblast
1
tissue
islet of Langerhans
1
right lobe of liver
1
cell line
glomerular visceral epithelial cell
1
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