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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
67
ChIP-seq
6
WGBS
4
ATAC-seq
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
67
DNA binding
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
12
transcription factor
11
narrow histone mark
Date released
49
August, 2017
18
October, 2018
Available data
37
bam
37
fastq
19
bigWig
8
tagAlign
7
bed narrowPeak
bigBed narrowPeak
4
bed bed3+
1
bed broadPeak
Organism
67
Homo sapiens
Biosample type
67
tissue
Organ
199
liver
159
pancreas
138
connective tissue
124
brain
93
epithelium
70
heart
67
adipose tissue
31
vasculature
30
blood vessel
28
kidney
25
musculature of body
22
embryo
18
limb
13
artery
11
nerve
7
vein
5
spleen
4
gonad
4
ovary
3
blood
3
bodily fluid
3
eye
1
lymph node
1
pituitary gland
Project
67
AMP
Genome assembly (visualization)
13
hg19
12
GRCh38
Lab
67
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
November, 2018
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
67 results
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ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
white adipose tissue
12
subcutaneous adipose tissue
10
omental fat pad
8
adipose tissue
1
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