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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
total RNA-seq
712
ChIP-seq
168
DNase-seq
64
ATAC-seq
16
small RNA-seq
11
WGBS
3
FAIRE-seq
Assay category
923
Transcription
712
DNA binding
235
DNA accessibility
11
DNA methylation
Target of assay
466
histone modification
465
histone
243
narrow histone mark
222
broad histone mark
164
control
82
transcription factor
23
RNA binding protein
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
186
October, 2019
170
August, 2017
163
June, 2019
116
July, 2018
115
May, 2019
79
April, 2019
74
October, 2018
69
November, 2017
64
July, 2019
48
December, 2017
39
November, 2019
38
May, 2021
November, 2018
24
May, 2022
15
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1881
bam
1709
bigWig
1076
tsv
927
bed narrowPeak
544
bigBed narrowPeak
351
fastq
238
tagAlign
204
bed broadPeak
196
bed bed3+
167
bigBed broadPeak
157
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1874
Homo sapiens
Biosample type
1881
tissue
609
primary cell
521
cell line
291
in vitro differentiated cells
3
stem cell
Organ
497
connective tissue
439
adipose tissue
422
pancreas
281
liver
224
brain
132
heart
114
limb
98
kidney
87
blood vessel
87
vasculature
66
bone element
44
musculature of body
42
nerve
34
artery
18
ureter
15
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1879
AMP
2
T1D
Genome assembly (visualization)
1681
GRCh38
1631
hg19
Lab
1856
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2018
BIOSAMPLE
ASSAY
1881 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
272
30
1
38
1
liver
147
118
1
bone tissue
58
body of pancreas
2
35
2
4
2
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