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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ChIP-seq
30
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
196
DNA binding
33
DNA accessibility
12
Transcription
Target of assay
166
histone
166
histone modification
105
narrow histone mark
61
broad histone mark
30
control
3
RNA binding protein
3
transcription factor
Date released
83
October, 2019
78
November, 2017
30
June, 2019
28
May, 2019
13
July, 2019
9
October, 2017
November, 2018
Available data
241
bam
220
bigWig
201
bed narrowPeak
125
bigBed narrowPeak
118
tagAlign
45
bed broadPeak
36
bigBed broadPeak
33
bed bed3+
26
tsv
19
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
241
Homo sapiens
Biosample type
224
tissue
17
primary cell
Organ
682
pancreas
628
liver
592
connective tissue
441
adipose tissue
317
epithelium
241
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
57
musculature of body
45
blood
45
bodily fluid
42
nerve
36
embryo
20
vein
18
ureter
15
spleen
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
241
AMP
Genome assembly (visualization)
213
GRCh38
153
hg19
Lab
241
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
month_released!
November, 2018
BIOSAMPLE
ASSAY
241 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
13
12
1
layer of hippocampus
20
temporal lobe
15
1
1
angular gyrus
15
caudate nucleus
14
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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