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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ATAC-seq
7
single cell RNA-seq
Assay category
7
DNA accessibility
7
Transcription
Date released
10
February, 2021
3
February, 2023
November, 2018
1
September, 2018
Available data
3305
bam
3089
bigWig
1744
bed narrowPeak
1600
tsv
1270
fastq
969
bigBed narrowPeak
398
tagAlign
313
bed broadPeak
276
bigBed broadPeak
264
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
7
bed bedgraph
7
csv
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
14
Homo sapiens
Biosample type
7
in vitro differentiated cells
6
tissue
1
primary cell
Organ
5
kidney
4
connective tissue
1
liver
Project
14
AMP
Genome assembly (visualization)
7
hg19
Lab
11
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
5
audit script error
1
inconsistent ontology term
month_released!
November, 2018
BIOSAMPLE
ASSAY
14 results
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ATAC-seq
single cell RNA-seq
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
tissue
kidney
5
liver
1
primary cell
pancreatic cell
1
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