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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
DNase-seq
112
ChIP-seq
2
ATAC-seq
Assay category
192
DNA accessibility
112
DNA binding
Target of assay
63
histone
63
histone modification
49
transcription factor
34
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
70
November, 2017
41
August, 2017
November, 2018
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
3055
bam
2842
bigWig
1584
tsv
1515
bed narrowPeak
1270
fastq
899
bigBed narrowPeak
349
tagAlign
304
bed broadPeak
267
bigBed broadPeak
256
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
298
Homo sapiens
Biosample type
200
tissue
58
cell line
45
primary cell
1
in vitro differentiated cells
Organ
78
kidney
60
liver
46
musculature of body
45
brain
32
limb
30
heart
18
epithelium
18
pancreas
18
ureter
11
vasculature
9
connective tissue
7
blood vessel
4
eye
2
adipose tissue
2
artery
Project
304
AMP
Genome assembly (visualization)
280
hg19
266
GRCh38
Lab
302
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
month_released!
November, 2018
October, 2019
BIOSAMPLE
ASSAY
304 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
12
3
kidney
13
muscle of leg
13
+ See 40 more…
cell line
HepG2
58
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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