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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
30
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
172
DNA binding
33
DNA accessibility
12
Transcription
3
3D chromatin structure
Target of assay
166
histone
166
histone modification
106
narrow histone mark
60
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
76
October, 2019
66
November, 2017
30
June, 2019
25
May, 2019
16
July, 2019
7
October, 2017
November, 2018
Available data
241
bam
220
bigWig
201
bed narrowPeak
125
bigBed narrowPeak
118
tagAlign
45
bed broadPeak
36
bigBed broadPeak
33
bed bed3+
26
tsv
19
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
220
Homo sapiens
Biosample type
200
tissue
20
primary cell
Organ
616
pancreas
570
liver
569
connective tissue
424
adipose tissue
301
epithelium
220
brain
184
heart
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
43
blood
43
bodily fluid
31
nerve
29
embryo
18
ureter
15
vein
10
spleen
6
eye
1
pericardium
1
pituitary gland
Project
220
AMP
Genome assembly (visualization)
212
GRCh38
157
hg19
Lab
220
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
month_released!
November, 2018
BIOSAMPLE
ASSAY
220 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
11
12
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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