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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
210
ChIP-seq
103
total RNA-seq
29
ATAC-seq
4
WGBS
3
RRBS
1
DNase-seq
1
FAIRE-seq
Assay category
210
DNA binding
103
Transcription
31
DNA accessibility
7
DNA methylation
Target of assay
74
histone modification
73
histone
72
transcription factor
64
control
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
2
chromatin remodeller
Date released
175
August, 2017
58
October, 2018
48
December, 2017
November, 2018
24
May, 2022
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
1
March, 2019
Available data
1881
bam
1749
bigWig
1076
tsv
967
bed narrowPeak
544
bigBed narrowPeak
351
fastq
238
tagAlign
204
bed broadPeak
196
bed bed3+
167
bigBed broadPeak
157
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
344
Homo sapiens
Biosample type
408
primary cell
366
cell line
351
tissue
141
in vitro differentiated cells
stem cell
Organ
206
pancreas
76
liver
42
adipose tissue
42
connective tissue
15
spleen
10
brain
2
musculature of body
Project
351
AMP
Genome assembly (visualization)
277
hg19
258
GRCh38
Lab
325
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2018
biosample_type!
stem cell
BIOSAMPLE
ASSAY
351 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
28
103
20
1
1
liver
63
1
1
body of pancreas
33
4
pancreas
16
spleen
14
1
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