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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
10
WGBS
3
ChIP-seq
1
FAIRE-seq
Assay category
29
DNA methylation
3
DNA binding
1
DNA accessibility
Target of assay
3
transcription factor
1
RNA binding protein
Date released
23
July, 2019
November, 2018
6
August, 2017
3
November, 2017
1
October, 2019
Available data
3305
bam
3089
bigWig
1744
bed narrowPeak
1600
tsv
1270
fastq
969
bigBed narrowPeak
398
tagAlign
313
bed broadPeak
276
bigBed broadPeak
264
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
7
bed bedgraph
7
csv
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
33
Homo sapiens
Biosample type
19
tissue
11
primary cell
3
cell line
Organ
8
heart
7
epithelium
5
liver
4
kidney
4
musculature of body
3
connective tissue
3
vasculature
2
adipose tissue
2
blood vessel
2
brain
2
pancreas
1
eye
1
limb
1
pericardium
1
vein
Project
33
AMP
Genome assembly (visualization)
23
hg19
10
GRCh38
Lab
33
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
month_released!
November, 2018
BIOSAMPLE
ASSAY
33 results
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RRBS
WGBS
ChIP-seq
FAIRE-seq
tissue
heart left ventricle
1
2
adipose tissue
2
heart right ventricle
2
skeletal muscle tissue
2
aorta
1
+ See 9 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
+ See 6 more…
cell line
HepG2
3
See all biosamples
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