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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
51
WGBS
39
ATAC-seq
21
snATAC-seq
19
RRBS
Assay category
70
DNA methylation
60
DNA accessibility
52
Transcription
Date released
134
May, 2022
23
July, 2019
19
September, 2020
November, 2018
6
August, 2017
Available data
3305
bam
3049
bigWig
1704
bed narrowPeak
1600
tsv
1270
fastq
969
bigBed narrowPeak
398
tagAlign
313
bed broadPeak
276
bigBed broadPeak
264
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
7
bed bedgraph
7
csv
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
182
Homo sapiens
Biosample type
163
primary cell
19
tissue
Organ
86
epithelium
82
pancreas
8
heart
4
kidney
4
musculature of body
3
connective tissue
2
adipose tissue
2
brain
2
liver
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
153
HPAP
29
AMP
Genome assembly (visualization)
19
hg19
10
GRCh38
Lab
153
Klaus Kaestner, Upenn
29
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
month_released!
November, 2018
BIOSAMPLE
ASSAY
182 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
RRBS
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cardiac fibroblast
1
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tissue
heart left ventricle
2
1
adipose tissue
2
heart right ventricle
2
skeletal muscle tissue
2
aorta
1
+ See 9 more…
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