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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
972
total RNA-seq
897
ChIP-seq
231
ATAC-seq
169
DNase-seq
161
single cell RNA-seq
24
pCHi-C
21
WGBS
17
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
RNA microarray
3
snDrop-seq
Assay category
1149
Transcription
897
DNA binding
420
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
184
control
87
transcription factor
28
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
456
February, 2021
284
August, 2017
242
October, 2019
193
May, 2020
172
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
73
February, 2023
48
December, 2017
47
September, 2023
41
May, 2022
40
March, 2020
40
May, 2024
40
November, 2019
38
May, 2021
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1857
bam
1749
bigWig
1076
tsv
949
bed narrowPeak
544
bigBed narrowPeak
327
fastq
238
tagAlign
204
bed broadPeak
196
bed bed3+
167
bigBed broadPeak
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2539
Homo sapiens
Biosample type
2548
tissue
848
primary cell
595
cell line
344
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
487
adipose tissue
447
pancreas
354
liver
313
heart
263
brain
237
kidney
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
70
bone element
56
eye
43
nerve
20
lung
18
ureter
16
spleen
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2478
AMP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
1837
GRCh38
1719
hg19
Lab
2305
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
3
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2018
lab.title!
Kyle Gaulton, UCSD
files.file_type!
txt
BIOSAMPLE
ASSAY
2548 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
287
71
39
1
4
1
3
1
4
1
adipose tissue
382
2
3
1
3
liver
167
141
20
1
1
3
1
1
1
kidney
27
75
13
51
6
1
1
1
heart left ventricle
3
35
2
3
18
1
4
1
1
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