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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1025
total RNA-seq
897
ChIP-seq
231
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
24
pCHi-C
21
WGBS
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
6
DNase-seq
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1215
Transcription
897
DNA binding
258
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
184
control
87
transcription factor
28
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
48
December, 2017
47
September, 2023
42
May, 2022
40
March, 2020
40
May, 2024
40
November, 2019
38
May, 2021
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1694
bam
1586
bigWig
1076
tsv
786
bed narrowPeak
381
bigBed narrowPeak
327
fastq
238
tagAlign
151
txt
64
xls
41
bed broadPeak
33
bed bed3+
19
bed bedMethyl
19
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
4
bigBed broadPeak
1
bedpe
1
tagAlign bed3+
Organism
2527
Homo sapiens
Biosample type
2536
tissue
793
primary cell
596
cell line
347
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
486
adipose tissue
443
pancreas
354
liver
286
heart
238
brain
231
kidney
158
bone element
130
blood vessel
130
vasculature
90
limb
71
artery
53
eye
50
musculature of body
43
nerve
20
lung
16
skeleton
16
spleen
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2466
AMP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
1674
GRCh38
1573
hg19
Lab
2236
AMP-T2D consortium
142
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2018
June, 2019
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
2536 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
DNase-seq
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
287
71
39
4
1
3
1
1
4
1
adipose tissue
382
2
3
1
3
liver
167
141
20
1
1
3
1
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
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