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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
75
ChIP-seq
2
ATAC-seq
Assay category
197
DNA accessibility
75
DNA binding
Target of assay
47
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
70
November, 2017
August, 2017
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2819
bam
2597
bigWig
1470
bed narrowPeak
1415
tsv
959
fastq
927
bigBed narrowPeak
272
bed broadPeak
261
bigBed broadPeak
229
bed bed3+
229
tagAlign
155
txt
153
zippedFastqFolder
64
xls
23
bed bedMethyl
23
bedpe bed3+
23
bigBed bedMethyl
23
hic
12
bed bed3
7
bed bedgraph
7
csv
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
272
Homo sapiens
Biosample type
178
tissue
59
cell line
35
primary cell
Organ
78
kidney
60
liver
45
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
7
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
nerve
1
adipose tissue
Project
272
AMP
Genome assembly (visualization)
254
GRCh38
248
hg19
Lab
270
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
month_released!
November, 2018
August, 2017
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
272 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
12
3
kidney
13
muscle of leg
13
+ See 40 more…
cell line
HepG2
58
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
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