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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
30
DNase-seq
16
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
134
DNA binding
34
DNA accessibility
23
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
110
histone
110
histone modification
67
broad histone mark
43
narrow histone mark
24
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
November, 2018
1
February, 2023
Available data
158
bam
144
bigWig
126
bed narrowPeak
125
bigBed narrowPeak
80
tagAlign
45
bed broadPeak
36
bigBed broadPeak
33
bed bed3+
25
tsv
19
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
198
Homo sapiens
Biosample type
177
tissue
21
primary cell
Organ
921
pancreas
731
liver
679
connective tissue
489
adipose tissue
489
epithelium
345
heart
324
kidney
198
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
54
blood
54
bodily fluid
53
limb
40
eye
37
embryo
20
lung
18
ureter
16
skeleton
16
spleen
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
198
AMP
Genome assembly (visualization)
137
GRCh38
84
hg19
Lab
198
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
November, 2018
October, 2019
BIOSAMPLE
ASSAY
198 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
15
12
1
1
layer of hippocampus
22
caudate nucleus
15
1
1
temporal lobe
15
1
1
substantia nigra
15
1
+ See 23 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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