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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
831
ChIP-seq
252
ATAC-seq
180
single cell RNA-seq
133
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
20
WGBS
16
small RNA-seq
12
Hi-C
11
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1220
Transcription
831
DNA binding
416
DNA accessibility
31
DNA methylation
12
3D chromatin structure
Target of assay
579
histone modification
578
histone
309
narrow histone mark
269
broad histone mark
167
control
87
transcription factor
28
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
284
August, 2017
229
August, 2021
193
May, 2020
173
October, 2019
131
June, 2019
120
July, 2018
108
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
72
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1767
bam
1658
bigWig
1069
tsv
875
bed narrowPeak
460
bigBed narrowPeak
351
fastq
238
tagAlign
168
bed broadPeak
160
bed bed3+
157
txt
131
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2620
Homo sapiens
Biosample type
2629
tissue
1028
primary cell
601
cell line
394
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
498
pancreas
487
adipose tissue
354
liver
313
heart
299
kidney
263
brain
158
bone element
133
blood vessel
133
vasculature
limb
82
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
16
spleen
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2532
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1741
GRCh38
1642
hg19
Lab
2277
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2018
September, 2020
organ_slims!
limb
BIOSAMPLE
ASSAY
2629 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
292
70
68
6
1
7
4
3
1
4
1
adipose tissue
382
2
3
1
3
liver
167
141
20
1
1
3
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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