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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
33
DNase-seq
9
snATAC-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
84
DNA binding
44
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
39
transcription factor
34
histone
34
histone modification
20
broad histone mark
14
narrow histone mark
9
control
8
RNA binding protein
8
chromatin remodeller
Date released
43
June, 2019
27
December, 2018
26
August, 2017
18
January, 2019
November, 2018
10
July, 2019
8
January, 2021
7
May, 2019
5
March, 2020
2
February, 2020
2
January, 2018
2
May, 2022
Available data
111
bigWig
102
bam
102
bed narrowPeak
89
bigBed narrowPeak
47
fastq
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
150
Homo sapiens
Biosample type
82
tissue
46
cell line
22
primary cell
Organ
939
pancreas
738
liver
683
connective tissue
524
epithelium
490
adipose tissue
354
kidney
353
heart
284
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
142
AMP
8
T1D
Genome assembly (visualization)
116
hg19
95
GRCh38
Lab
142
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
1
audit script error
1
inconsistent control
month_released!
November, 2018
BIOSAMPLE
ASSAY
150 results
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ChIP-seq
DNase-seq
snATAC-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
1
4
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
+ See 3 more…
cell line
GM12878
45
1
primary cell
skeletal muscle satellite cell
8
1
1
peripheral blood mononuclear cell
8
skeletal muscle cell
2
1
1
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