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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
14
total RNA-seq
1
ATAC-seq
1
GRO-seq
1
pCHi-C
Assay category
36
DNA binding
14
Transcription
1
DNA accessibility
Target of assay
18
histone
18
histone modification
12
control
10
narrow histone mark
8
broad histone mark
6
transcription factor
Date released
13
December, 2017
13
February, 2018
November, 2018
8
August, 2021
7
December, 2018
7
January, 2019
2
May, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
51
bam
42
fastq
39
bigWig
24
bed narrowPeak
15
tsv
9
bigBed narrowPeak
3
bed bed3+
Organism
53
Homo sapiens
Biosample type
29
in vitro differentiated cells
16
tissue
8
cell line
Organ
939
pancreas
738
liver
683
connective tissue
524
epithelium
490
adipose tissue
354
kidney
353
heart
284
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
53
AMP
Genome assembly (visualization)
39
GRCh38
39
hg19
1
hg18
Lab
53
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
November, 2018
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
spleen
14
1
1
cell line
H1-hESC
8
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