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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
22
DNase-seq
19
total RNA-seq
5
ChIP-seq
4
pCHi-C
1
RRBS
Assay category
22
DNA accessibility
19
Transcription
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
25
June, 2019
20
October, 2019
4
February, 2023
1
February, 2020
1
July, 2019
Available data
25
bam
24
bed narrowPeak
24
bigBed narrowPeak
24
bigWig
22
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
51
Homo sapiens
Biosample type
46
tissue
5
primary cell
Organ
787
pancreas
715
liver
658
connective tissue
484
adipose tissue
421
epithelium
346
heart
280
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
53
blood
53
bodily fluid
42
nerve
37
embryo
33
eye
22
vein
20
lung
18
ureter
15
spleen
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
51
AMP
Genome assembly (visualization)
25
hg19
24
GRCh38
Lab
51
AMP-T2D consortium
month_released!
November, 2018
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
51 results
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DNase-seq
total RNA-seq
ChIP-seq
pCHi-C
RRBS
tissue
islet of Langerhans
14
2
4
renal pelvis
10
retina
3
3
left renal pelvis
4
right renal pelvis
4
+ See 1 more…
primary cell
retinal pigment epithelial cell
1
3
1
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