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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
543
total RNA-seq
282
ChIP-seq
97
single cell RNA-seq
72
ATAC-seq
35
DNase-seq
14
WGBS
8
pCHi-C
4
Hi-C
4
small RNA-seq
2
Capture-C
2
RRBS
1
RNA microarray
Assay category
282
DNA binding
Target of assay
173
histone
173
histone modification
101
broad histone mark
71
narrow histone mark
56
transcription factor
53
control
20
RNA binding protein
2
chromatin remodeller
Date released
117
August, 2017
57
April, 2019
40
May, 2024
23
October, 2018
21
May, 2019
12
June, 2019
6
February, 2021
6
October, 2019
Available data
190
bam
186
bigWig
169
bed narrowPeak
90
fastq
76
bigBed narrowPeak
28
tagAlign
11
bed bed3+
1
bed broadPeak
Organism
282
Homo sapiens
Biosample type
197
tissue
67
in vitro differentiated cells
12
primary cell
6
cell line
Organ
503
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
52
kidney
45
blood
45
bodily fluid
39
musculature of body
35
nerve
34
artery
22
embryo
17
vein
14
spleen
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
282
AMP
Genome assembly (visualization)
185
GRCh38
147
hg19
Lab
242
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
11
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
November, 2018
BIOSAMPLE
ASSAY
282 results
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ChIP-seq
tissue
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
heart left ventricle
35
heart
14
heart right ventricle
13
+ See 8 more…
in vitro differentiated cells
adipocyte
67
primary cell
mesenchymal stem cell
7
cardiac fibroblast
5
cell line
smooth muscle cell of the coronary artery
6
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