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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
503
ChIP-seq
189
total RNA-seq
23
ATAC-seq
10
single cell RNA-seq
10
snATAC-seq
4
Hi-C
4
WGBS
4
pCHi-C
3
DNase-seq
3
small RNA-seq
2
RRBS
2
STARR-seq
1
whole genome sequencing assay
Assay category
503
DNA binding
202
Transcription
36
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
289
transcription factor
108
control
103
histone modification
102
histone
66
recombinant protein
60
narrow histone mark
42
broad histone mark
39
RNA binding protein
18
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
November, 2018
40
May, 2022
35
August, 2021
19
April, 2020
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
March, 2020
3
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
Available data
628
bam
570
bigWig
412
fastq
390
bed narrowPeak
307
bigBed narrowPeak
175
tsv
86
tagAlign
60
bed broadPeak
60
bigBed broadPeak
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
757
Homo sapiens
Biosample type
374
tissue
355
cell line
15
in vitro differentiated cells
14
primary cell
Organ
939
pancreas
738
liver
683
connective tissue
524
epithelium
490
adipose tissue
354
kidney
353
heart
284
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
739
AMP
19
LungMap
Genome assembly (visualization)
576
hg19
479
GRCh38
Lab
668
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
19
Xin Sun, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2018
BIOSAMPLE
ASSAY
758 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
Hi-C
WGBS
pCHi-C
DNase-seq
small RNA-seq
RRBS
STARR-seq
whole genome sequencing assay
tissue
liver
141
167
20
1
1
3
1
1
1
lung
9
10
1
right lobe of liver
10
3
1
1
1
2
cell line
HepG2
333
14
1
2
2
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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