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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
44
DNA binding
9
DNA accessibility
Target of assay
39
transcription factor
8
RNA binding protein
8
chromatin remodeller
3
control
1
histone
1
histone modification
narrow histone mark
Date released
27
December, 2018
17
January, 2019
November, 2018
8
January, 2021
1
January, 2018
Available data
44
bam
44
fastq
42
bigWig
41
bed narrowPeak
41
bigBed narrowPeak
Organism
53
Homo sapiens
Biosample type
45
cell line
8
primary cell
Organ
857
pancreas
674
liver
649
connective tissue
478
adipose tissue
467
epithelium
350
heart
338
kidney
205
vasculature
200
blood vessel
164
brain
159
bone element
135
artery
103
limb
77
musculature of body
58
eye
53
blood
53
bodily fluid
35
nerve
29
embryo
20
lung
18
ureter
16
skeleton
14
spleen
14
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
45
AMP
8
T1D
Genome assembly (visualization)
42
hg19
41
GRCh38
Lab
45
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
November, 2018
target.investigated_as!
narrow histone mark
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
44
1
primary cell
peripheral blood mononuclear cell
8
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