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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
94
ChIP-seq
34
ATAC-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
115
Transcription
94
DNA binding
52
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
175
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
16
January, 2021
Available data
170
bigWig
164
bam
96
tsv
82
bed narrowPeak
44
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
283
Homo sapiens
Biosample type
189
primary cell
52
tissue
37
in vitro differentiated cells
5
cell line
Organ
51
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
196
T1D
87
AMP
Genome assembly (visualization)
188
hg19
140
GRCh38
Lab
3387
AMP-T2D consortium
324
Klaus Kaestner, Upenn
283
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
KPMP
40
Karen Mohlke, UNC
36
Bing Ren, UCSD
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
month_released!
November, 2018
target.investigated_as!
narrow histone mark
lab.title!
KPMP
BIOSAMPLE
ASSAY
283 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
44
1
CD8-positive, alpha-beta T cell
4
23
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
11
29
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
27
5
cell line
EndoC_BH1
3
2
See all biosamples
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