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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
101
DNA binding
35
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
60
November, 2017
30
June, 2019
18
July, 2019
18
May, 2019
14
October, 2017
12
February, 2020
12
October, 2019
2
March, 2020
November, 2018
1
February, 2023
Available data
136
bam
114
bigWig
95
bed narrowPeak
92
bigBed narrowPeak
64
tagAlign
37
bed broadPeak
33
bed bed3+
33
bigBed broadPeak
26
tsv
15
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
167
Homo sapiens
Biosample type
149
tissue
18
primary cell
Organ
862
pancreas
647
liver
645
connective tissue
477
adipose tissue
471
epithelium
261
heart
209
kidney
204
vasculature
199
blood vessel
167
brain
159
bone element
133
artery
107
limb
83
musculature of body
58
eye
53
blood
53
bodily fluid
35
nerve
21
embryo
20
lung
18
ureter
16
skeleton
16
vein
14
spleen
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
167
AMP
Genome assembly (visualization)
108
GRCh38
70
hg19
Lab
167
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
month_released!
November, 2018
August, 2021
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
167 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
16
12
1
1
1
layer of hippocampus
15
caudate nucleus
10
1
1
temporal lobe
10
1
1
substantia nigra
10
1
+ See 29 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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