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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
snATAC-seq
6
ChIP-seq
1
ATAC-seq
Assay category
9
DNA accessibility
6
DNA binding
Target of assay
transcription factor
8
RNA binding protein
8
chromatin remodeller
3
control
1
histone
1
histone modification
1
narrow histone mark
Date released
8
January, 2021
4
January, 2019
November, 2018
2
December, 2018
1
January, 2018
Available data
6
bam
6
fastq
4
bigWig
3
bed narrowPeak
3
bigBed narrowPeak
Organism
15
Homo sapiens
Biosample type
8
primary cell
7
cell line
Organ
920
pancreas
643
connective tissue
515
epithelium
473
adipose tissue
449
liver
344
kidney
341
heart
281
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
18
ureter
16
skeleton
15
blood
15
bodily fluid
13
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
8
T1D
7
AMP
Genome assembly (visualization)
4
hg19
3
GRCh38
Lab
8
Kyle Gaulton, UCSD
7
AMP-T2D consortium
month_released!
November, 2018
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
15 results
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snATAC-seq
ChIP-seq
ATAC-seq
primary cell
peripheral blood mononuclear cell
8
cell line
GM12878
6
1
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