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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
Assay category
28
DNA binding
Target of assay
889
histone modification
888
histone
450
narrow histone mark
437
broad histone mark
436
transcription factor
307
control
80
RNA binding protein
73
recombinant protein
28
chromatin remodeller
2
nucleotide modification
2
other context
2
other post-translational modification
Date released
15
November, 2017
November, 2018
6
January, 2019
3
August, 2017
2
December, 2017
2
December, 2018
Available data
28
bam
28
bed narrowPeak
28
bigWig
28
fastq
26
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
28
Homo sapiens
Biosample type
23
cell line
2
in vitro differentiated cells
2
tissue
1
primary cell
Organ
18
liver
8
blood
8
bodily fluid
2
connective tissue
epithelium
Project
28
AMP
Genome assembly (visualization)
28
hg19
26
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
4
missing controlled_by
Audit category:
8
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2018
organ_slims!
epithelium
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
cell line
HepG2
15
GM12878
8
in vitro differentiated cells
adipocyte
2
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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