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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
5
MeRIP-seq
Assay category
29
DNA binding
Target of assay
982
histone modification
981
histone
499
narrow histone mark
481
broad histone mark
445
transcription factor
337
control
88
RNA binding protein
73
recombinant protein
29
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
15
November, 2017
November, 2018
6
January, 2019
5
November, 2020
3
August, 2017
3
December, 2017
2
December, 2018
Available data
29
bam
29
bed narrowPeak
29
bigWig
29
fastq
27
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
34
Homo sapiens
Biosample type
26
cell line
4
tissue
3
in vitro differentiated cells
1
primary cell
Organ
18
liver
8
blood
8
bodily fluid
5
pancreas
4
epithelium
2
connective tissue
Project
34
AMP
Genome assembly (visualization)
29
hg19
27
GRCh38
Lab
29
AMP-T2D consortium
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent control
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
8
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2018
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
MeRIP-seq
cell line
HepG2
15
GM12878
8
EndoC_BH1
3
tissue
islet of Langerhans
2
liver
2
in vitro differentiated cells
adipocyte
2
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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