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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
564
ChIP-seq
270
ATAC-seq
263
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
263
Transcription
83
DNA accessibility
Date released
112
August, 2021
55
May, 2022
47
September, 2023
45
February, 2021
40
September, 2020
19
April, 2020
16
January, 2021
3
December, 2019
3
February, 2023
3
May, 2023
1
August, 2022
1
November, 2018
1
September, 2018
Available data
105
tsv
73
zippedFastqFolder
63
fastq
13
txt
8
csv
Organism
345
Homo sapiens
Biosample type
201
tissue
143
primary cell
2
in vitro differentiated cells
Organ
93
heart
70
kidney
19
lung
11
pancreas
8
blood
8
bodily fluid
6
blood vessel
6
vasculature
2
artery
1
liver
1
musculature of body
Project
133
HPAP
129
AMP
47
KPMP
19
LungMap
18
T1D
Genome assembly (visualization)
hg19
106
GRCh38
Lab
133
Klaus Kaestner, Upenn
112
AMP-T2D consortium
47
KPMP
19
Xin Sun, UCSD
18
Kyle Gaulton, UCSD
17
Katalin Susztak, Upenn
Audit category:
35
audit script error
2
inconsistent ontology term
month_released!
November, 2019
assembly!
hg19
BIOSAMPLE
ASSAY
346 results
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single cell RNA-seq
snATAC-seq
tissue
kidney
64
6
lung
9
10
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 15 more…
primary cell
Langerhans cell
85
48
peripheral blood mononuclear cell
8
pancreatic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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