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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
Hi-C
Assay category
14
3D chromatin structure
Date released
8
March, 2020
3
October, 2022
2
August, 2021
November, 2019
1
October, 2019
Available data
3047
bam
2839
bigWig
1613
bed narrowPeak
1449
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
14
Homo sapiens
Biosample type
9
tissue
in vitro differentiated cells
4
primary cell
1
cell line
Organ
5
pancreas
4
epithelium
3
heart
2
blood vessel
2
liver
2
musculature of body
2
vasculature
1
vein
Project
11
AMP
3
HPAP
Genome assembly (visualization)
13
hg19
Lab
9
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
3
audit script error
month_released!
November, 2019
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
14 results
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Hi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
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