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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1539
ChIP-seq
1266
total RNA-seq
305
ATAC-seq
181
DNase-seq
176
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
WGBS
28
snATAC-seq
22
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
22
3D chromatin structure
Date released
9
March, 2020
4
July, 2019
4
October, 2019
3
August, 2021
November, 2019
1
December, 2018
1
March, 2019
Available data
15
hic
14
bedpe bed3+
1
bed bed3+
1
bedpe
1
bigWig
1
fastq
1
hdf5
Organism
22
Homo sapiens
Biosample type
15
tissue
primary cell
4
in vitro differentiated cells
3
cell line
Organ
6
musculature of body
4
limb
4
pancreas
3
heart
3
liver
1
blood vessel
1
kidney
1
vasculature
Project
22
AMP
Genome assembly (visualization)
16
hg19
1
GRCh38
Lab
18
AMP-T2D consortium
3
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
November, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
22 results
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Clear Filters
Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
2
Panc1
1
See all biosamples
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