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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
471
ChIP-seq
28
ATAC-seq
2
DNase-seq
Assay category
471
DNA binding
114
Transcription
30
DNA accessibility
3
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
360
transcription factor
89
recombinant protein
78
control
64
RNA binding protein
30
chromatin remodeller
28
histone
28
histone modification
15
narrow histone mark
13
broad histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
60
November, 2018
27
December, 2018
25
October, 2019
18
August, 2021
18
January, 2019
17
February, 2021
17
May, 2021
November, 2019
3
March, 2020
1
January, 2018
Available data
463
bam
420
fastq
405
bigWig
392
bed narrowPeak
355
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
tsv
Organism
501
Homo sapiens
Biosample type
1357
tissue
567
primary cell
501
cell line
236
in vitro differentiated cells
3
stem cell
Organ
379
liver
61
blood
61
bodily fluid
34
pancreas
21
epithelium
14
artery
14
blood vessel
14
heart
14
vasculature
11
kidney
Project
499
AMP
2
T1D
Genome assembly (visualization)
410
hg19
346
GRCh38
Lab
483
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
30
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
November, 2019
BIOSAMPLE
ASSAY
501 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
378
1
GM12878
60
1
EndoC_BH1
2
18
Panc1
13
1
smooth muscle cell of the coronary artery
6
8
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