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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
total RNA-seq
28
ATAC-seq
2
DNase-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
471
DNA binding
114
Transcription
30
DNA accessibility
3
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Date released
87
February, 2021
20
May, 2021
17
August, 2021
6
March, 2020
6
October, 2019
5
January, 2019
2
March, 2023
November, 2019
1
January, 2018
Available data
114
bam
113
tsv
108
bigWig
11
bed narrowPeak
5
fastq
2
bigBed narrowPeak
1
bed bed3
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
142
Homo sapiens
Biosample type
1658
tissue
724
primary cell
176
in vitro differentiated cells
144
cell line
2
stem cell
Organ
60
artery
60
blood vessel
60
heart
60
vasculature
52
epithelium
51
pancreas
15
liver
8
embryo
5
kidney
1
blood
1
bodily fluid
Project
140
AMP
2
T1D
2
community
Genome assembly (visualization)
117
hg19
114
GRCh38
Lab
133
AMP-T2D consortium
9
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
53
inconsistent ontology term
1
inconsistent replicate
month_released!
November, 2019
BIOSAMPLE
ASSAY
144 results
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total RNA-seq
ATAC-seq
DNase-seq
shRNA RNA-seq
siRNA RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
32
18
HepG2
14
1
H1-hESC
8
EndoC-BH1
1
1
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