Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
108
total RNA-seq
28
ATAC-seq
6
MeRIP-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
3
STARR-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
110
Transcription
108
DNA binding
28
DNA accessibility
3
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
78
control
25
transcription factor
8
histone
8
histone modification
5
narrow histone mark
3
RNA binding protein
3
broad histone mark
3
nucleotide modification
1
recombinant protein
Date released
96
February, 2021
66
November, 2017
42
August, 2021
21
May, 2021
November, 2019
9
March, 2020
8
January, 2019
8
October, 2019
6
February, 2023
6
November, 2020
5
November, 2018
2
March, 2023
1
December, 2018
1
January, 2018
1
May, 2020
1
October, 2022
Available data
552
bam
498
bigWig
427
fastq
384
bed narrowPeak
bigBed narrowPeak
112
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
1
vcf
Organism
269
Homo sapiens
Biosample type
1964
tissue
959
primary cell
372
in vitro differentiated cells
273
cell line
10
stem cell
Organ
108
liver
69
pancreas
66
artery
66
blood vessel
66
heart
66
vasculature
62
epithelium
kidney
8
embryo
7
blood
7
bodily fluid
1
mammary gland
Project
262
AMP
9
T1D
2
community
Genome assembly (visualization)
154
hg19
117
GRCh38
Lab
228
AMP-T2D consortium
32
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
61
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2019
organ_slims!
kidney
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
273 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
STARR-seq
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
85
14
1
2
2
2
1
1
EndoC_BH1
2
32
18
6
3
2
2
1
smooth muscle cell of the coronary artery
6
52
8
H1-hESC
8
Panc1
7
1
+ See 8 more…
See all biosamples
Download