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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
3
MeRIP-seq
Assay category
78
DNA binding
Target of assay
360
transcription factor
89
recombinant protein
81
control
64
RNA binding protein
30
chromatin remodeller
28
histone
28
histone modification
15
narrow histone mark
13
broad histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
56
November, 2017
9
October, 2019
4
August, 2021
3
February, 2021
3
January, 2019
3
November, 2018
3
November, 2020
November, 2019
Available data
74
bam
62
fastq
13
bigWig
4
tagAlign
Organism
81
Homo sapiens
Biosample type
187
tissue
81
cell line
37
in vitro differentiated cells
35
primary cell
1
stem cell
Organ
60
liver
9
pancreas
6
blood
6
bodily fluid
3
epithelium
3
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
Project
81
AMP
Genome assembly (visualization)
13
hg19
Lab
74
AMP-T2D consortium
4
Bing Ren, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
month_released!
November, 2019
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
MeRIP-seq
cell line
HepG2
60
GM12878
6
Panc1
6
EndoC_BH1
3
smooth muscle cell of the coronary artery
2
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
iPSC derived cell line
1
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