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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
270
total RNA-seq
117
ChIP-seq
43
ATAC-seq
11
snATAC-seq
7
DNase-seq
4
MeRIP-seq
4
WGBS
3
Hi-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
272
Transcription
117
DNA binding
63
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Target of assay
73
histone
73
histone modification
41
broad histone mark
32
narrow histone mark
29
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
147
August, 2017
120
July, 2018
51
October, 2018
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
9
March, 2020
8
January, 2021
7
November, 2018
6
April, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
3
October, 2019
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
391
bam
354
bigWig
256
tsv
213
fastq
104
bed narrowPeak
62
bigBed narrowPeak
27
bed bed3+
20
bed broadPeak
16
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
2
bedpe bed3+
2
hic
1
bedpe
Organism
459
Homo sapiens
Biosample type
466
tissue
346
primary cell
76
cell line
3
in vitro differentiated cells
Organ
546
connective tissue
487
adipose tissue
466
pancreas
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
436
AMP
30
T1D
Genome assembly (visualization)
374
hg19
348
GRCh38
Lab
403
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2019
BIOSAMPLE
ASSAY
466 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
MeRIP-seq
WGBS
Hi-C
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
265
50
39
7
1
4
2
1
1
body of pancreas
3
35
4
4
2
2
pancreas
2
16
4
2
2
1
1
1
1
endocrine pancreas
16
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