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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
Hi-C
1
pCHi-C
Assay category
14
3D chromatin structure
Date released
8
March, 2020
3
October, 2022
2
August, 2021
1
August, 2018
November, 2019
1
October, 2019
Available data
2867
bam
2706
bigWig
1708
bed narrowPeak
1347
fastq
1246
tsv
1018
bigBed narrowPeak
345
tagAlign
318
bed broadPeak
281
bigBed broadPeak
267
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
17
hic
15
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
15
Homo sapiens
Biosample type
9
tissue
4
primary cell
1
cell line
1
in vitro differentiated cells
Organ
5
pancreas
4
epithelium
3
heart
2
blood vessel
2
liver
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
vein
Project
12
AMP
3
HPAP
Genome assembly (visualization)
13
hg19
Lab
10
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
inconsistent ontology term
3
audit script error
month_released!
November, 2019
May, 2020
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
15 results
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Hi-C
pCHi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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