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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
DNase-seq
15
ChIP-seq
Assay category
30
DNA accessibility
15
DNA binding
Target of assay
12
histone
12
histone modification
8
narrow histone mark
4
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
12
November, 2017
3
October, 2017
November, 2018
Available data
241
bam
220
bigWig
201
bed narrowPeak
125
bigBed narrowPeak
118
tagAlign
45
bed broadPeak
36
bigBed broadPeak
33
bed bed3+
26
tsv
19
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
45
Homo sapiens
Biosample type
34
tissue
11
primary cell
Organ
78
kidney
60
liver
46
musculature of body
45
brain
36
limb
30
heart
22
epithelium
19
pancreas
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
Project
45
AMP
Genome assembly (visualization)
44
GRCh38
35
hg19
Lab
45
AMP-T2D consortium
Audit category:
2
missing controlled_by
month_released!
November, 2019
November, 2018
BIOSAMPLE
ASSAY
45 results
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DNase-seq
ChIP-seq
tissue
brain
12
3
caudate nucleus
1
1
cingulate gyrus
2
frontal cortex
2
middle frontal area 46
2
+ See 11 more…
primary cell
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
astrocyte of the hippocampus
1
brain pericyte
1
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