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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
523
total RNA-seq
84
RNA microarray
snATAC-seq
18
ATAC-seq
18
single cell RNA-seq
8
ChIP-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
541
Transcription
18
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
662
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
271
August, 2021
267
May, 2021
218
June, 2019
187
February, 2023
178
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
9
April, 2020
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
Available data
550
bam
537
tsv
529
bigWig
89
txt
23
bed narrowPeak
18
fastq
8
tagAlign
6
csv
2
bed bed3
2
bed bed3+
Organism
662
Homo sapiens
Biosample type
545
tissue
96
cell line
in vitro differentiated cells
21
primary cell
Organ
447
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
32
epithelium
32
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
644
AMP
18
HPAP
Genome assembly (visualization)
548
hg19
546
GRCh38
Lab
644
AMP-T2D consortium
18
Klaus Kaestner, Upenn
Audit category:
110
inconsistent ontology term
5
audit script error
1
inconsistent replicate
month_released!
November, 2019
biosample_type!
in vitro differentiated cells
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
662 results
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Clear Filters
total RNA-seq
RNA microarray
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
12
pancreatic alpha cell
6
osteoblast
1
1
1
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